PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G135700.1
Common NameB456_011G135700, LOC105776836
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 167aa    MW: 18574.2 Da    PI: 8.8007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G135700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67.2e-0649881054
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        + R d++ +++ +L++l+ +      +K + a++L +A+eYI+ L
  Gorai.011G135700.1 49 KDRKDKVGERIVTLQQLVSPY-----GKTDTASVLLQAMEYIQFL 88
                        78999999**********999.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-93899IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6743988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1241106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00174594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-54993No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MQTLYSCSEN GIEVRTMMEN KRSPCSVDHG SFTPLASKRQ KSDLSISTKD RKDKVGERIV  60
TLQQLVSPYG KTDTASVLLQ AMEYIQFLHE QVKVLSAPYL QTSPTNNMQA SIKPAQELEH  120
YSLRSQGLCL VPLSYTMGVV HSNGADIWAP IKTTSPKFDK PFSQFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455220.11e-123PREDICTED: transcription factor bHLH113-like isoform X1
SwissprotQ9LT675e-33BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A0D2UJK11e-123A0A0D2UJK1_G
STRINGGLYMA07G32980.16e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.55e-62bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]